6CAA	Transport Protein	date	Jan 29, 2018
title	Cryoem Structure Of Human Slc4a4 Sodium-Coupled Acid-Base Tr Nbce1
authors	K.W.Huynh, J.Jiang, N.Abuladze, K.Tsirulnikov, L.Kao, X.Shao, D.Ne R.Azimov, A.Pushkin, Z.H.Zhou, I.Kurtz
compound		source
Molecule: Electrogenic Sodium Bicarbonate Cotransporter 1 Chain: A, B Synonym: Sodium Bicarbonate Cotransporter, Na(+)Hco3(-) Cotransporter, Solute Carrier Family 4 Member 4, Knbc1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Variant: A Organ: Kidney Gene: Slc4a4, Nbc, Nbc1, Nbce1 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptt
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.90 Å
Gene Ontology	Chain Function Process Component A, B inorganic anion exchanger ac... anion transmembrane transpor...
Primary reference	CryoEM structure of the human SLC4A4 sodium-coupled acid-base transporter NBCe1., Huynh KW, Jiang J, Abuladze N, Tsirulnikov K, Kao L, Shao X, Newman D, Azimov R, Pushkin A, Zhou ZH, Kurtz I, Nat Commun. 2018 Mar 2;9(1):900. doi: 10.1038/s41467-018-03271-3. PMID:29500354

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk] Biological Unit Coordinates (6caa.pdb1.gz) 133 Kb CSU: Contacts of Structural Units for 6CAA Retrieve 6CAA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6CAA from S2C, [Save to disk]

View 6CAA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6CAA

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6caa_A] [6caa_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6CAA

Community annotation for 6CAA at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---