6CM4 Membrane Protein date Mar 02, 2018
title Structure Of The D2 Dopamine Receptor Bound To The Atypical Antipsychotic Drug Risperidone
authors S.Wang, T.Che, A.Levit, B.K.Shoichet, D.Wacker, B.L.Roth
compound source
Molecule: D(2) Dopamine Receptor, Endolysin Chimera
Chain: A
Synonym: Dopamine D2 Receptor, Lysis Protein, Lysozyme, Mur Dopamine D2 Receptor;
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human, Bacteriophage T4
Organism_taxid: 9606, 10665
Gene: Drd2, E, T4tp126
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1-Hm
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.979 72.523 151.307 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.87 Å
ligand 8NU, OLA, PEG enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the D2 dopamine receptor bound to the atypical antipsychotic drug risperidone., Wang S, Che T, Levit A, Shoichet BK, Wacker D, Roth BL, Nature. 2018 Jan 24. pii: nature25758. doi: 10.1038/nature25758. PMID:29466326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (6cm4.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 6CM4
  • CSU: Contacts of Structural Units for 6CM4
  • Structure Factors (177 Kb)
  • Retrieve 6CM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CM4 from S2C, [Save to disk]
  • View 6CM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CM4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cm4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CM4
  • Community annotation for 6CM4 at PDBWiki (http://pdbwiki.org)

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