6CWY Transferase Transferase Inhibitor date Apr 01, 2018
title Crystal Structure Of Sumo E1 In Complex With An Allosteric I
authors Z.Lv, L.Yuan, J.H.Atkison, K.M.Williams, S.K.Olsen
compound source
Molecule: Sumo-Activating Enzyme Subunit 1
Chain: C
Synonym: Ubiquitin-Like 1-Activating Enzyme E1a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sae1, Aos1, Sua1, Uble1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b

Molecule: Sumo-Activating Enzyme Subunit 2
Chain: D
Synonym: Anthracycline-Associated Resistance Arx,Ubiquitin- Activating Enzyme E1b,Ubiquitin-Like Modifier-Activating En
Ec: 2.3.2.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uba2, Sae2, Uble1b, Hrihfb2115
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28b
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.055 116.046 174.143 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.46 Å
ligand FHJ, GOL, MG, SO4, ZN enzyme Transferase E.C.2.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C
  • ubiquitin activating enzyme ...
  • enzyme activator activity


  • D


    Primary referenceMolecular mechanism of a covalent allosteric inhibitor of SUMO E1 activating enzyme., Lv Z, Yuan L, Atkison JH, Williams KM, Vega R, Sessions EH, Divlianska DB, Davies C, Chen Y, Olsen SK, Nat Commun. 2018 Dec 4;9(1):5145. doi: 10.1038/s41467-018-07015-1. PMID:30514846
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (6cwy.pdb1.gz) 268 Kb
  • LPC: Ligand-Protein Contacts for 6CWY
  • CSU: Contacts of Structural Units for 6CWY
  • Structure Factors (243 Kb)
  • Retrieve 6CWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CWY from S2C, [Save to disk]
  • View 6CWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CWY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cwy_D] [6cwy_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CWY
  • Community annotation for 6CWY at PDBWiki (http://pdbwiki.org)

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