6D84	Protein Transport	date	Apr 25, 2018
title	Structure Of The Cargo Bound Ap-1:Arf1:Tetherin-Nef (L164a, Dileucine Mutant Dimer
authors	C.Z.Buffalo, K.L.Morris, J.H.Hurley
compound		source
Molecule: Bone Marrow Stromal Antigen 2,Protein Nef Chain: T, L, R, O Fragment: Tetherin Unp Residues 2-21, Nef Unp Residues 1-20 Synonym: Bst-2,Hm1.24 Antigen,Tetherin,3'Orf,Negative Facto Protein; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens, Human Immunodeficiency V Organism_common: Human Organism_taxid: 9606, 11676 Gene: Bst2, Nef Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ap-1 Complex Subunit Beta-1 Chain: B, F Synonym: Adaptor Protein Complex Ap-1 Subunit Beta-1,Adapto Protein Complex 1 Subunit Beta-1,Beta-1-Adaptin,Beta-Adapti Clathrin Assembly Protein Complex 1 Beta Large Chain,Golgi Ha1ap1 Adaptin Beta Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ap1b1, Adtb1, Bam22, Clapb2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Adp-Ribosylation Factor 1 Chain: C, H, I, N Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Arf1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ap-1 Complex Subunit Gamma-1 Chain: G, K Synonym: Adaptor Protein Complex Ap-1 Subunit Gamma-1,Adapt Protein Complex 1 Subunit Gamma-1,Clathrin Assembly Protein Gamma-1 Large Chain,Gamma-Adaptin,Gamma1-Adaptin,Golgi Adap Ha1ap1 Adaptin Subunit Gamma-1; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap1g1, Adtg, Clapg1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ap-1 Complex Subunit Mu-1 Chain: M, P Synonym: Ap-Mu Chain Family Member Mu1a,Adaptor Protein Com Subunit Mu-1,Adaptor-Related Protein Complex 1 Subunit Mu-1 Assembly Protein Complex 1 Mu-1 Medium Chain 1,Clathrin Coa Protein Ap47,Clathrin Coat-Associated Protein Ap47,Golgi Ad Ha1ap1 Adaptin Mu-1 Subunit,Mu-Adaptin 1,Mu1a-Adaptin; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap1m1, Cltnm Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ap-1 Complex Subunit Sigma-3 Chain: S, Q Synonym: Adaptor Protein Complex Ap-1 Subunit Sigma-1c,Adap Related Protein Complex 1 Subunit Sigma-1c,Clathrin Assembl Complex 1 Sigma-1c Small Chain,Golgi Adaptor Ha1ap1 Adapti Subunit,Sigma 1c Subunit Of Ap-1 Clathrin,Sigma-Adaptin 1c, Adaptin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ap1s3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	6.72 Å
ligand	GTP, MG	enzyme
Gene Ontology	Chain Function Process Component F, B K, G N, H, C, I phospholipase D activator ac... O, T, R, L P, M S, Q
Primary reference	HIV-1 Nefs Are Cargo-Sensitive AP-1 Trimerization Switches in Tetherin Downregulation., Morris KL, Buffalo CZ, Sturzel CM, Heusinger E, Kirchhoff F, Ren X, Hurley JH, Cell. 2018 Jul 26;174(3):659-671.e14. doi: 10.1016/j.cell.2018.07.004. PMID:30053425

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (607 Kb) [Save to disk] Biological Unit Coordinates (6d84.pdb1.gz) 595 Kb LPC: Ligand-Protein Contacts for 6D84 CSU: Contacts of Structural Units for 6D84 Retrieve 6D84 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6D84 from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6d84_K] [6d84_S] [6d84_M] [6d84_T] [6d84_F] [6d84_H] [6d84_Q] [6d84_I] [6d84_P] [6d84_N] [6d84_R] [6d84_L] [6d84_C] [6d84_G] [6d84_B] [6d84_O] SWISS-PROT database: Domain organization of by SWISSPFAM

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