6DC6	Signaling Protein Ligase	date	May 04, 2018
title	Crystal Structure Of Human Ubiquitin Activating Enzyme E1 (U Complex With Ubiquitin
authors	Z.Lv, L.Yuan, K.M.Williams, J.H.Atkison, S.K.Olsen
compound		source
Molecule: Ubiquitin-Like Modifier-Activating Enzyme 1 Chain: A, C Synonym: Protein A1s9,Ubiquitin-Activating Enzyme E1 Ec: 6.2.1.45 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Uba1, A1s9t, Ube1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pfastbac-Htb
Molecule: Ubiquitin Chain: B, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet29-Ntev
symmetry	Space Group: P 1 21 1	R_factor 0.213 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.999 70.438 188.851 90.00 95.19 90.00
method	X-Ray Diffraction	resolution	3.14 Å
ligand	MG, POP	enzyme	Ligase E.C.6.2.1.45 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Crystal structure of a human ubiquitin E1-ubiquitin complex reveals conserved functional elements essential for activity., Lv Z, Williams KM, Yuan L, Atkison JH, Olsen SK, J Biol Chem. 2018 Oct 2. pii: RA118.003975. doi: 10.1074/jbc.RA118.003975. PMID:30279270

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (728 Kb) [Save to disk] Biological Unit Coordinates (6dc6.pdb1.gz) 358 Kb Biological Unit Coordinates (6dc6.pdb2.gz) 364 Kb LPC: Ligand-Protein Contacts for 6DC6 CSU: Contacts of Structural Units for 6DC6 Structure Factors (312 Kb) Retrieve 6DC6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DC6 from S2C, [Save to disk]

View 6DC6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DC6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dc6_D] [6dc6_A] [6dc6_C] [6dc6_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DC6

Community annotation for 6DC6 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---