6DD9 Structural Protein date May 09, 2018
title Structure Of Mouse Sycp3, P1 Form
authors S.C.Rosenberg, I.C.Munoz, I.Uson, K.D.Corbett
compound source
Molecule: Synaptonemal Complex Protein 3
Chain: A, B, D, C
Synonym: Synaptonemal Complex Protein 3,Isoform Cra_a
Engineered: Yes
Other_details: Selenomethionine-Derivatized
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Sycp3, Mcg_16771
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.287 R_Free 0.331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.869 52.275 75.595 95.17 103.70 110.54
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Primary referenceA conserved filamentous assembly underlies the structure of the meiotic chromosome axis., West AM, Rosenberg SC, Ur SN, Lehmer MK, Ye Q, Hagemann G, Caballero I, Uson I, MacQueen AJ, Herzog F, Corbett KD, Elife. 2019 Jan 18;8. pii: 40372. doi: 10.7554/eLife.40372. PMID:30657449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (6dd9.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 6DD9
  • CSU: Contacts of Structural Units for 6DD9
  • Structure Factors (831 Kb)
  • Retrieve 6DD9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DD9 from S2C, [Save to disk]
    • View 6DD9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DD9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dd9_A] [6dd9_C] [6dd9_D] [6dd9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DD9
  • Community annotation for 6DD9 at PDBWiki (http://pdbwiki.org)

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