6DJL	Signaling Protein Protein Transport	date	May 25, 2018
title	Crystal Structure Of The Rab11 Gef Sh3bp5 Bound To Nucleotid Rab11a
authors	J.E.Burke, M.L.Jenkins, M.J.Boulanger
compound		source
Molecule: Ras-Related Protein Rab-11a Chain: A, F, G, H Synonym: Rab-11,Yl8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11a, Rab11 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Sh3 Domain-Binding Protein 5 Chain: B, C, D, E Synonym: Sh3bp-5,Sh3 Domain-Binding Protein That Preferenti Associates With Btk; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sh3bp5, Sab Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21
symmetry	Space Group: I 2 2 2	R_factor 0.235 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.850 197.040 304.710 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
Gene Ontology	Chain Function Process Component E, B, C, D F, A, H, G
Primary reference	Structural determinants of Rab11 activation by the guanine nucleotide exchange factor SH3BP5., Jenkins ML, Margaria JP, Stariha JTB, Hoffmann RM, McPhail JA, Hamelin DJ, Boulanger MJ, Hirsch E, Burke JE, Nat Commun. 2018 Sep 14;9(1):3772. doi: 10.1038/s41467-018-06196-z. PMID:30217979

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (579 Kb) [Save to disk] Biological Unit Coordinates (6djl.pdb1.gz) 145 Kb Biological Unit Coordinates (6djl.pdb2.gz) 142 Kb Biological Unit Coordinates (6djl.pdb3.gz) 143 Kb Biological Unit Coordinates (6djl.pdb4.gz) 145 Kb CSU: Contacts of Structural Units for 6DJL Structure Factors (1194 Kb) Retrieve 6DJL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DJL from S2C, [Save to disk]

View 6DJL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DJL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6djl_A] [6djl_E] [6djl_G] [6djl_B] [6djl_C] [6djl_H] [6djl_F] [6djl_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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