6DJV Chaperone date May 26, 2018
title Mtb Clpb In Complex With Atpgammas And Casein, Conformer 2
authors H.J.Yu, H.L.Li
compound source
Molecule: Chaperone Protein Clpb
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Clpb, Clpb_1, Ers023446_03763, Ers124361_00048, Samea2682864_01140, Samea2683035_02692;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Casein Polyalanine Model
Chain: N
Organism_scientific: Bos Taurus
Organism_taxid: 9913
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ADP, AGS enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceATP hydrolysis-coupled peptide translocation mechanism of Mycobacterium tuberculosis ClpB., Yu H, Lupoli TJ, Kovach A, Meng X, Zhao G, Nathan CF, Li H, Proc Natl Acad Sci U S A. 2018 Sep 26. pii: 1810648115. doi:, 10.1073/pnas.1810648115. PMID:30257943
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (522 Kb) [Save to disk]
  • Biological Unit Coordinates (6djv.pdb1.gz) 509 Kb
  • LPC: Ligand-Protein Contacts for 6DJV
  • CSU: Contacts of Structural Units for 6DJV
  • Retrieve 6DJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DJV from S2C, [Save to disk]
    • View 6DJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6DJV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6djv_C] [6djv_A] [6djv_N] [6djv_D] [6djv_E] [6djv_B] [6djv_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6DJV
  • Community annotation for 6DJV at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science