6DW1 Membrane Protein date Jun 26, 2018
title Cryo-Em Structure Of The Benzodiazepine-Sensitive Alpha1beta Tri-Heteromeric Gabaa Receptor In Complex With Gaba (Ecd Ma
authors S.Phulera, H.Zhu, J.Yu, C.Yoshioka, E.Gouaux
compound source
Molecule: Gamma-Aminobutyric Acid Receptor Subunit Gamma-2
Chain: D
Synonym: Gaba(A) Receptor Subunit Gamma-2
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Gabrg2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Gamma-Aminobutyric Acid Receptor Subunit Alpha-1, Aminobutyric Acid Receptor Subunit Alpha-1;
Chain: C, A
Fragment: Residues 39-334
Synonym: Gaba(A) Receptor Subunit Alpha-1,Gaba(A) Receptor Alpha-1;
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Gabra1, Gabra-1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Gamma-Aminobutyric Acid Receptor Subunit Beta-1,G Aminobutyric Acid Receptor Subunit Beta-1;
Chain: E, B
Fragment: Residues 33-474
Synonym: Gaba(A) Receptor Subunit Beta-1,Gaba(A) Receptor S Beta-1;
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Gabrb1, Gabrb-1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.10 Å
ligand ABU, BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D


E, B


Primary referenceCryo-EM structure of the benzodiazepine-sensitive alpha1beta1gamma2S tri-heteromeric GABAA receptor in complex with GABA., Phulera S, Zhu H, Yu J, Claxton DP, Yoder N, Yoshioka C, Gouaux E, Elife. 2018 Jul 25;7. pii: 39383. doi: 10.7554/eLife.39383. PMID:30044221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (6dw1.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 6DW1
  • CSU: Contacts of Structural Units for 6DW1
  • Retrieve 6DW1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DW1 from S2C, [Save to disk]
  • View 6DW1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DW1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dw1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dw1_B] [6dw1_D] [6dw1_E] [6dw1_C] [6dw1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DW1
  • Community annotation for 6DW1 at PDBWiki (http://pdbwiki.org)

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