6F9O Hydrolase date Dec 15, 2017
title Crystal Structure Of Cold-Adapted Haloalkane Dehalogenase Dp Psychrobacter Cryohalolentis K5
authors K.Tratsiak, T.Prudnikova, I.Drienovska, J.Damborsky, J.Brynda, P. M.Kuty, R.Chaloupkova, I.Kuta Smatanova, P.Rezacova
compound source
Molecule: Haloalkane Dehalogenase
Chain: A
Ec: 3.8.1.5
Engineered: Yes
 Organism_scientific: Psychrobacter Cryohalolentis (Strain K
Organism_taxid: 335284
Strain: K5
Gene: Dhma, Pcryo_1253
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 1 21 1
R_factor 0.110 R_Free 0.132
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.332 79.451 43.489 90.00 94.98 90.00
method X-Ray Diffractionresolution 1.05 Å
ligand CL, NA, PEG enzyme Hydrolase E.C.3.8.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (6f9o.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 6F9O
  • CSU: Contacts of Structural Units for 6F9O
  • Structure Factors (3280 Kb)
  • Retrieve 6F9O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F9O from S2C, [Save to disk]
    • View 6F9O in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F9O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f9o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F9O
  • Community annotation for 6F9O at PDBWiki (http://pdbwiki.org)

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