6FQM 3.06A COMPLEX OF S.AUREUS GYRASE with imidazopyrazinone T1 AND DNA date
authors Bax, B.D., Germe, T., Basque, E., Maxwell, A.
compound source
symmetry
R_factor
R_Free 0.23440
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.06
ligand E32, GOL, MN, PTR, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, c, a, C


b, D, d, B


Primary referenceA new class of antibacterials, the imidazopyrazinones, reveal structural transitions involved in DNA gyrase poisoning and mechanisms of resistance., Germe T, Voros J, Jeannot F, Taillier T, Stavenger RA, Bacque E, Maxwell A, Bax BD, Nucleic Acids Res. 2018 Mar 10. pii: 4925761. doi: 10.1093/nar/gky181. PMID:29538767
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (889 Kb) [Save to disk]
  • Biological Unit Coordinates (6fqm.pdb1.gz) 442 Kb
  • Biological Unit Coordinates (6fqm.pdb2.gz) 437 Kb
  • LPC: Ligand-Protein Contacts for 6FQM
  • CSU: Contacts of Structural Units for 6FQM
  • Structure Factors (2949 Kb)
  • Retrieve 6FQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FQM from S2C, [Save to disk]
  • View 6FQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FQM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fqm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fqm_e] [6fqm_c] [6fqm_F] [6fqm_B] [6fqm_A] [6fqm_a] [6fqm_D] [6fqm_E] [6fqm_d] [6fqm_C] [6fqm_f] [6fqm_b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FQM
  • Community annotation for 6FQM at PDBWiki (http://pdbwiki.org)

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