6GCT Membrane Protein date Apr 19, 2018
title Cryo-Em Structure Of The Human Neutral Amino Acid Transporte
authors A.A.Garaeva, G.T.Oostergetel, C.Gati, A.Guskov, C.Paulino, D.J.Sl
compound source
Molecule: Neutral Amino Acid Transporter B(0)
Chain: A, B, C
Synonym: Atb(0),Baboon M7 Virus Receptor,Rd114simian Type Retrovirus Receptor,Sodium-Dependent Neutral Amino Acid Tra Type 2,Solute Carrier Family 1 Member 5;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc1a5, Asct2, M7v1, Rdr, Rdrc
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.85 Å
ligand GLN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • virus receptor activity


    • Primary referenceCryo-EM structure of the human neutral amino acid transporter ASCT2., Garaeva AA, Oostergetel GT, Gati C, Guskov A, Paulino C, Slotboom DJ, Nat Struct Mol Biol. 2018 Jun;25(6):515-521. doi: 10.1038/s41594-018-0076-y. Epub, 2018 Jun 5. PMID:29872227
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (6gct.pdb1.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 6GCT
  • CSU: Contacts of Structural Units for 6GCT
  • Retrieve 6GCT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GCT from S2C, [Save to disk]
    • View 6GCT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GCT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gct_A] [6gct_C] [6gct_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GCT
  • Community annotation for 6GCT at PDBWiki (http://pdbwiki.org)

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