OCA Atlas for 6GL7

6GL7

Signaling Protein

date

May 23, 2018

title

Neurturin-Gfra2-Ret Extracellular Complex

authors

J.M.Bigalke, S.Aibara, J.Sandmark, A.Amunts

compound

source

Molecule: Neurturin
Chain: B, A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrtn
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gdnf Family Receptor Alpha-2
Chain: D, C
Synonym: Gfr-Alpha-2,Gdnf Receptor Beta,Gdnfr-Beta,Neurturi Alpha,Ntnr-Alpha,Ret Ligand 2,Tgf-Beta-Related Neurotrophic Receptor 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gfra2, Gdnfrb, Retl2, Trnr2
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Proto-Oncogene Tyrosine-Protein Kinase Receptor R
Chain: F, E
Synonym: Cadherin Family Member 12,Proto-Oncogene C-Ret
Ec: 2.7.10.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ret, Cdhf12, Cdhr16, Ptc, Ret51
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

6.30 Å

ligand

enzyme

Transferase E.C.2.7.10.1 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A, B
D, C	glial cell-derived neurotrop...
F, E

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (477 Kb) [Save to disk]

Biological Unit Coordinates (6gl7.pdb1.gz) 469 Kb

CSU: Contacts of Structural Units for 6GL7

Retrieve 6GL7 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6GL7 from S2C, [Save to disk]

View 6GL7 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6GL7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6gl7_E] [6gl7_D] [6gl7_B] [6gl7_A] [6gl7_F] [6gl7_C]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6GL7

Community annotation for 6GL7 at PDBWiki (http://pdbwiki.org)

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