6GSI	Virus	date	Jun 14, 2018
title	Feline Calicivirus Strain F9 Bound To A Soluble Ectodomain F Feline Junctional Adhesion Molecule A - Leading To Assembly Portal Structure At A Unique Three-Fold Axis.
authors	M.J.Conley, D.Bhella
compound		source
Molecule: Capsid Protein Chain: A, B, C, D Synonym: Coat Protein,Cp,Vp1		Organism_scientific: Feline Calicivirus Strain F9 Organism_common: Fcv Organism_taxid: 11981
Molecule: Junctional Adhesion Molecule A Chain: E, F, G, H Fragment: Unp Residues 29-230 Synonym: Jam-A,Junctional Adhesion Molecule 1,Jam-1 Engineered: Yes		Organism_scientific: Felis Catus Organism_common: Domestic Cat Organism_taxid: 9685 Gene: F11r, Jam1 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho
Molecule: Vp2 Chain: I, J, K, L Synonym: Minor Capsid Protein		Organism_scientific: Feline Calicivirus Strain F9 Organism_common: Fcv Organism_taxid: 11981
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.75 Å
ligand	K	enzyme
Gene Ontology	Chain Function Process Component F, E, H, G J, K, I, L
Primary reference	Calicivirus VP2 forms a portal-like assembly following receptor engagement., Conley MJ, McElwee M, Azmi L, Gabrielsen M, Byron O, Goodfellow IG, Bhella D, Nature. 2019 Jan;565(7739):377-381. doi: 10.1038/s41586-018-0852-1. Epub 2019 Jan, 9. PMID:30626974

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (888 Kb) [Save to disk] Biological Unit Coordinates (6gsi.pdb1.gz) 2624 Kb LPC: Ligand-Protein Contacts for 6GSI CSU: Contacts of Structural Units for 6GSI Retrieve 6GSI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6GSI from S2C, [Save to disk]

View 6GSI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6GSI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6gsi_B] [6gsi_L] [6gsi_G] [6gsi_E] [6gsi_H] [6gsi_I] [6gsi_D] [6gsi_F] [6gsi_A] [6gsi_C] [6gsi_K] [6gsi_J] SWISS-PROT database: Domain organization of by SWISSPFAM

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