6H3A Ligase date Jul 17, 2018
title Crystal Structure Of The Kap1 Rbcc Domain In Complex With Th Cue1 Domain.
authors J.A.Newman, H.Aitkenhead, M.Lim, H.L.Williams, J.Q.Svejstrup, F.V C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi
compound source
Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily A Containing Deadh Box 1;
Chain: D, B
Synonym: Atp-Dependent Helicase 1,Hhel1
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcad1, Kiaa1122
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Intermediary Factor 1-Beta
Chain: A, F
Synonym: Tif1-Beta,E3 Sumo-Protein Ligase Trim28,Krab-Assoc Protein 1,Kap-1,Krab-Interacting Protein 1,Krip-1,Nuclear C Kap-1,Ring Finger Protein 96,Ring-Type E3 Ubiquitin Transfe Beta,Tripartite Motif-Containing Protein 28;
Ec: 2.3.2.27
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim28, Kap1, Rnf96, Tif1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 3
R_factor 0.279 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
299.914 299.914 299.914 90.00 90.00 90.00
method X-Ray Diffractionresolution 5.51 Å
ligand ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (6h3a.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 6H3A
  • CSU: Contacts of Structural Units for 6H3A
  • Structure Factors (603 Kb)
  • Retrieve 6H3A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H3A from S2C, [Save to disk]
  • View 6H3A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H3A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h3a_D] [6h3a_B] [6h3a_A] [6h3a_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H3A
  • Community annotation for 6H3A at PDBWiki (http://pdbwiki.org)

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