6HXN Lyase date Oct 17, 2018
title Structure Of The Citryl-Coa Lyase Core Module Of Chlorobium Atp Citrate Lyase (Space Group P3121)
authors K.Verstraete, K.Verschueren
compound source
Molecule: Atp-Citrate Lyase Alpha-Subunit
Chain: A, B
Engineered: Yes
Other_details: Prior To Crystallization, The N-Terminal Seq Mgsshhhhhhssglvpr Was Removed By Thrombin Digestion.
Organism_scientific: Chlorobium Limicola
Organism_taxid: 1092
Gene: Acla
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_plasmid: Pet15b
symmetry Space Group: P 31 2 1
R_factor 0.173 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.029 110.029 92.749 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand COA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle., Verschueren KHG, Blanchet C, Felix J, Dansercoer A, De Vos D, Bloch Y, Van Beeumen J, Svergun D, Gutsche I, Savvides SN, Verstraete K, Nature. 2019 Apr 3. pii: 10.1038/s41586-019-1095-5. doi:, 10.1038/s41586-019-1095-5. PMID:30944476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (6hxn.pdb1.gz) 346 Kb
  • LPC: Ligand-Protein Contacts for 6HXN
  • CSU: Contacts of Structural Units for 6HXN
  • Structure Factors (2813 Kb)
  • Retrieve 6HXN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HXN from S2C, [Save to disk]
  • View 6HXN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HXN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hxn_A] [6hxn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HXN
  • Community annotation for 6HXN at PDBWiki (http://pdbwiki.org)

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