6J1X Ligase date Dec 30, 2018
title Wwp1 Close Conformation
authors Z.H.Liu
compound source
Molecule: Nedd4-Like E3 Ubiquitin-Protein Ligase Wwp1
Chain: B
Synonym: Atrophin-1-Interacting Protein 5,Aip5,Hect-Type E3 Transferase Wwp1,Tgif-Interacting Ubiquitin Ligase 1,Tiul1, Containing Protein 1;
Ec: 2.3.2.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wwp1
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.309 45.444 116.545 90.00 93.79 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL enzyme Transferase E.C.2.3.2.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (6j1x.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 6J1X
  • CSU: Contacts of Structural Units for 6J1X
  • Structure Factors (550 Kb)
  • Retrieve 6J1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6J1X from S2C, [Save to disk]
  • View 6J1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6J1X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6j1x_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6J1X
  • Community annotation for 6J1X at PDBWiki (http://pdbwiki.org)

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