6J9C	Transcription Dna	date	Jan 22, 2019
title	Crystal Structure Of Arabidopsis Thaliana Transcription Fact Dna Complex
authors	H.Hu, J.Du
compound		source
Molecule: B3 Domain-Containing Transcription Factor Lec2 Chain: A, D Synonym: Protein Leafy Cotyledon 2 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Lec2, At1g28300, F3h9.5 Expression_system: Escherichia Coli Bl21 (De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
Molecule: Dna (5'-D(Gpaptptpcptpgpcpaptpgpgpap 3'); Chain: B, E Fragment: Flc Cme Dna Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Cpapaptpcpcpaptpgpcpapgpap 3'); Chain: C, F Fragment: Flc Cme Dna Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 2	R_factor 0.225 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.073 96.601 99.263 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
Gene Ontology	Chain Function Process Component A, D
Primary reference	Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis., Tao Z, Hu H, Luo X, Jia B, Du J, He Y, Nat Plants. 2019 Apr;5(4):424-435. doi: 10.1038/s41477-019-0402-3. Epub 2019 Apr , 8. PMID:30962525

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk] Biological Unit Coordinates (6j9c.pdb1.gz) 61 Kb Biological Unit Coordinates (6j9c.pdb2.gz) 65 Kb CSU: Contacts of Structural Units for 6J9C Structure Factors (115 Kb) Retrieve 6J9C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6J9C from S2C, [Save to disk]

View 6J9C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6J9C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6j9c_C] [6j9c_B] [6j9c_F] [6j9c_A] [6j9c_D] [6j9c_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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