6JI2 Translation date Feb 20, 2019
title Crystal Structure Of Archaeal Ribosomal Protein Ap1, Apelota Bound Aef1a Complex
authors K.Maruyama, H.Imai, M.Kawamura, S.Ishino, Y.Ishino, K.Ito, T.Uchiu
compound source
Molecule: Elongation Factor 1-Alpha
Chain: A, E
Synonym: Ef-1-Alpha
Engineered: Yes
 Organism_scientific: Aeropyrum Pernix K1
Organism_taxid: 272557
Strain: K1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Pelota Homolog
Chain: B, F
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Aeropyrum Pernix K1
Organism_taxid: 272557
Strain: K1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Archaeal Ribosomal Stalk Protein Ap1
Chain: X
Engineered: Yes
Synthetic: Yes
Organism_scientific: Aeropyrum Pernix K1
Organism_taxid: 272557
symmetry Space Group: P 1
R_factor 0.199 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.447 73.405 108.142 98.64 93.80 100.44
method X-Ray Diffractionresolution 3.00 Å
ligand GTP, MG, NA enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


F, B
  • nuclease activity
  • endonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (6ji2.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (6ji2.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 6JI2
  • CSU: Contacts of Structural Units for 6JI2
  • Structure Factors (1223 Kb)
  • Retrieve 6JI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JI2 from S2C, [Save to disk]
    • View 6JI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6JI2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ji2_F] [6ji2_X] [6ji2_E] [6ji2_B] [6ji2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6JI2
  • Community annotation for 6JI2 at PDBWiki (http://pdbwiki.org)

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