6M6B	Transcription	date	Mar 14, 2020
title	Cryo-Em Structure Of Thermus Thermophilus Mfd In Complex Wit Polymerase And Atp-Gamma-S
authors	J.Shi, A.Wen, Y.Feng
compound		source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha Chain: A, B Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha; Ec: 2.7.7.6		Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579); Organism_taxid: 300852 Strain: Hb8 Atcc 27634 Dsm 579
Molecule: Dna-Directed Rna Polymerase Subunit Beta Chain: C Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta; Ec: 2.7.7.6		Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579); Organism_taxid: 300852 Strain: Hb8 Atcc 27634 Dsm 579
Molecule: Dna-Directed Rna Polymerase Subunit Beta' Chain: D Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta'; Ec: 2.7.7.6		Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579); Organism_taxid: 300852 Strain: Hb8 Atcc 27634 Dsm 579
Molecule: Dna-Directed Rna Polymerase Subunit Omega Chain: E Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega; Ec: 2.7.7.6		Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579); Organism_taxid: 300852 Strain: Hb8 Atcc 27634 Dsm 579
Molecule: Transcription-Repair-Coupling Factor Chain: M Synonym: Trcf Ec: 3.6.4.- Engineered: Yes		Organism_scientific: Thermus Thermophilus (Strain Hb27 At 163 Dsm 7039); Organism_taxid: 262724 Strain: Hb27 Atcc Baa-163 Dsm 7039 Gene: Mfd, Tt_c0533 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Template Strand Dna Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Thermus Thermophilus Organism_taxid: 274
Molecule: Nontemplate Strand Dna Chain: N Engineered: Yes		Synthetic: Yes Organism_scientific: Thermus Thermophilus Organism_taxid: 274
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.10 Å
ligand	AGS, MG, ZN	enzyme	Transferase E.C.2.7.7.6 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (512 Kb) [Save to disk] Biological Unit Coordinates (6m6b.pdb1.gz) 504 Kb LPC: Ligand-Protein Contacts for 6M6B CSU: Contacts of Structural Units for 6M6B Retrieve 6M6B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6M6B from S2C, [Save to disk]

View 6M6B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6M6B

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6m6b_E] [6m6b_M] [6m6b_A] [6m6b_N] [6m6b_C] [6m6b_D] [6m6b_B] [6m6b_T] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6M6B

Community annotation for 6M6B at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---