6MOL Biosynthetic Protein date Oct 04, 2018
title Monoextended Darpin M_r12 Complex With Epor
authors K.M.Jude, K.Mohan, K.C.Garcia, Y.Guo
compound source
Molecule: Monoextended Darpin R12 (M_r12)
Chain: A
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Erythropoietin Receptor
Chain: B, C
Synonym: Epo-R
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epor
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 63
R_factor 0.219 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.109 168.109 78.029 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.16 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, B


Primary referenceTopological control of cytokine receptor signaling induces differential effects in hematopoiesis., Mohan K, Ueda G, Kim AR, Jude KM, Fallas JA, Guo Y, Hafer M, Miao Y, Saxton RA, Piehler J, Sankaran VG, Baker D, Garcia KC, Science. 2019 May 24;364(6442). pii: 364/6442/eaav7532. doi:, 10.1126/science.aav7532. Epub 2019 May 23. PMID:31123111
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (6mol.pdb1.gz) 281 Kb
  • LPC: Ligand-Protein Contacts for 6MOL
  • CSU: Contacts of Structural Units for 6MOL
  • Structure Factors (2398 Kb)
  • Retrieve 6MOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MOL from S2C, [Save to disk]
  • View 6MOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MOL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mol from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mol_C] [6mol_A] [6mol_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MOL
  • Community annotation for 6MOL at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science