6NDZ	Biosynthetic Protein Signaling Protein	date	Dec 14, 2018
title	Designed Repeat Protein In Complex With Fz8
authors	Y.Miao, K.M.Jude, K.C.Garcia
compound		source
Molecule: Frizzled-8 Chain: A, C, E Synonym: Hfz8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fzd8 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
Molecule: Designed Repeat Binding Protein Chain: B, D, F Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.212 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.930 109.015 114.373 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.26 Å
ligand	ACT, ACY, MPD	enzyme
Primary reference	Receptor subtype discrimination using extensive shape complementary designed interfaces., Dang LT, Miao Y, Ha A, Yuki K, Park K, Janda CY, Jude KM, Mohan K, Ha N, Vallon M, Yuan J, Vilches-Moure JG, Kuo CJ, Garcia KC, Baker D, Nat Struct Mol Biol. 2019 May 13. pii: 10.1038/s41594-019-0224-z. doi:, 10.1038/s41594-019-0224-z. PMID:31086346

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk] Biological Unit Coordinates (6ndz.pdb1.gz) 101 Kb Biological Unit Coordinates (6ndz.pdb2.gz) 100 Kb Biological Unit Coordinates (6ndz.pdb3.gz) 100 Kb LPC: Ligand-Protein Contacts for 6NDZ CSU: Contacts of Structural Units for 6NDZ Structure Factors (1153 Kb) Retrieve 6NDZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6NDZ from S2C, [Save to disk]

View 6NDZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6NDZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ndz_E] [6ndz_C] [6ndz_F] [6ndz_B] [6ndz_D] [6ndz_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6NDZ at PDBWiki (http://pdbwiki.org)

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