6O84 Membrane Protein date Mar 08, 2019
title Cryo-Em Structure Of Otop3 From Xenopus Tropicalis
authors Q.F.Chen, X.C.Bai, Y.X.Jiang
compound source
Molecule: Loc100127796 Protein,Loc100127796 Protein,Otop3, Loc100127796 Protein,Loc100127796 Protein;
Chain: A, B
Engineered: Yes
 Organism_scientific: Xenopus Tropicalis
Organism_common: Western Clawed Frog
Organism_taxid: 8364
Gene: Otop3, Loc100127796
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.92 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional characterization of an otopetrin family proton channel., Chen Q, Zeng W, She J, Bai X, Jiang Y, Elife. 2019 Apr 11;8. pii: 46710. doi: 10.7554/eLife.46710. PMID:30973323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (6o84.pdb1.gz) 111 Kb
  • CSU: Contacts of Structural Units for 6O84
  • Retrieve 6O84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O84 from S2C, [Save to disk]
    • View 6O84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O84
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o84_A] [6o84_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O84
  • Community annotation for 6O84 at PDBWiki (http://pdbwiki.org)

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