6OAB Motor Protein date Mar 15, 2019
title Cdc48-Npl4 Complex Processing Poly-Ubiquitinated Substrate I Presence Of Adp-Befx, State 2
authors E.C.Twomey, Z.Ji, T.E.Wales, N.O.Bodnar, J.R.Engen, T.A.Rapoport
compound source
Molecule: Cell Division Control Protein 48
Chain: D, E, B, C, A
Synonym: Cell Division Cycle Protein 48, Transitional Endop Reticulum Atpase Homolog, Cdc48;
Ec: 3.6.4.6
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Cdc48, Ydl126c
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Poly(Alanine) Substrate
Chain: H
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand ADP, BEF enzyme Hydrolase E.C.3.6.4.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B
  • protein phosphatase regulato...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (6oab.pdb1.gz) 351 Kb
  • LPC: Ligand-Protein Contacts for 6OAB
  • CSU: Contacts of Structural Units for 6OAB
  • Retrieve 6OAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OAB from S2C, [Save to disk]
    • View 6OAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OAB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oab_A] [6oab_B] [6oab_H] [6oab_D] [6oab_E] [6oab_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OAB
  • Community annotation for 6OAB at PDBWiki (http://pdbwiki.org)

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