6OF2 Rna Binding Protein date Mar 28, 2019
title Precursor Ribosomal Rna Processing Complex, State 2.
authors M.C.Pillon, A.L.Hsu, J.M.Krahn, J.G.Williams, K.H.Goslen, M.Sobha M.J.Borgnia, R.E.Stanley
compound source
Molecule: Ribonuclease
Chain: A, D
Engineered: Yes
 Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719);
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Ctht_0066080
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Clp1_p Domain-Containing Protein
Chain: B, E
Engineered: Yes
Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719);
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Ctht_0016120
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.90 Å
ligand AGS, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • endonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (6of2.pdb1.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 6OF2
  • CSU: Contacts of Structural Units for 6OF2
  • Retrieve 6OF2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OF2 from S2C, [Save to disk]
    • View 6OF2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OF2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6of2_E] [6of2_B] [6of2_D] [6of2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OF2
  • Community annotation for 6OF2 at PDBWiki (http://pdbwiki.org)

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