6OPC Motor Protein date Apr 24, 2019
title Cdc48 Hexamer In A Complex With Substrate And Shp1(Ubx Domai
authors I.Cooney, H.Han, M.Stewart, R.H.Carson, D.Hansen, J.C.Price, C.P.H P.S.Shen
compound source
Molecule: Cell Division Control Protein 48
Chain: A, B, C, D, E, F
Synonym: Cell Division Cycle Protein 48, Transitional Endop Reticulum Atpase Homolog, Cdc48;
Ec: 3.6.4.6
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Substrate Bound To The Central Pore Of The Cdc48
Chain: G
Other_details: Co-Purified With Cdc48 Hexamer
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Ubx Domain-Containing Protein 1
Chain: Z
Synonym: Suppressor Of High-Copy Pp1 Protein, Shp1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand ADP, BEF, MG enzyme Hydrolase E.C.3.6.4.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • protein phosphatase regulato...


    • Z
  • protein phosphatase regulato...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (565 Kb) [Save to disk]
  • Biological Unit Coordinates (6opc.pdb1.gz) 548 Kb
  • LPC: Ligand-Protein Contacts for 6OPC
  • CSU: Contacts of Structural Units for 6OPC
  • Retrieve 6OPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OPC from S2C, [Save to disk]
    • View 6OPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OPC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6opc_B] [6opc_D] [6opc_A] [6opc_G] [6opc_F] [6opc_Z] [6opc_C] [6opc_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OPC
  • Community annotation for 6OPC at PDBWiki (http://pdbwiki.org)

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