6OPM Casposase bound to integration product date
authors Dyda, F., Hickman, A.B., Kailasan, S.
compound source
symmetry
R_factor
R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand CA, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nuclease activity
  • endonuclease activity


    • Primary referenceCasposase structure and the mechanistic link between DNA transposition and spacer acquisition by CRISPR-Cas., Hickman AB, Kailasan S, Genzor P, Haase AD, Dyda F, Elife. 2020 Jan 8;9. pii: 50004. doi: 10.7554/eLife.50004. PMID:31913120
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (543 Kb) [Save to disk]
  • Biological Unit Coordinates (6opm.pdb1.gz) 528 Kb
  • Biological Unit Coordinates (6opm.pdb2.gz) 6 Kb
  • Biological Unit Coordinates (6opm.pdb3.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 6OPM
  • CSU: Contacts of Structural Units for 6OPM
  • Structure Factors (2656 Kb)
  • Retrieve 6OPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OPM from S2C, [Save to disk]
    • View 6OPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OPM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6opm_B] [6opm_A] [6opm_H] [6opm_C] [6opm_J] [6opm_D] [6opm_E] [6opm_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OPM
  • Community annotation for 6OPM at PDBWiki (http://pdbwiki.org)

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