6R8F Signaling Protein date Apr 01, 2019
title Cryo-Em Structure Of The Human Brisc-Shmt2 Complex
authors M.Walden, E.Hesketh, L.Tian, N.A.Ranson, R.A.Greenberg, E.Zeqiraj
compound source
Molecule: Lys-63-Specific Deubiquitinase Brcc36
Chain: A, C
Synonym: Brca1-A Complex Subunit Brcc36,Brca1brca2-Contain Complex Subunit 3,Brca1brca2-Containing Complex Subunit 36 Complex Subunit Brcc36;
Ec: 3.4.19.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brcc3, Brcc36, C6.1a, Cxorf53
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Brisc Complex Subunit Abraxas 2
Chain: B, D
Synonym: Abraxas Brother Protein 1,Protein Fam175b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abraxas2, Abro1, Fam175b, Kiaa0157
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Serine Hydroxymethyltransferase, Mitochondrial
Chain: K, L
Synonym: Shmt,Glycine Hydroxymethyltransferase,Serine Methy
Ec: 2.1.2.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shmt2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Brisc And Brca1-A Complex Member 2,Brcc45 (Bre, B Brca1-A Complex Member 2);
Chain: E, G
Synonym: Brca1-A Complex Subunit Bre,Brca1brca2-Containing Subunit 45,Brain And Reproductive Organ-Expressed Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Babam2, Brcc45, Bre, Babam2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand ZN enzyme Hydrolase E.C.3.4.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • enzyme regulator activity


    • G, E


    K, L
  • translation repressor activi...


    • Primary referenceMetabolic control of BRISC-SHMT2 assembly regulates immune signalling., Walden M, Tian L, Ross RL, Sykora UM, Byrne DP, Hesketh EL, Masandi SK, Cassel J, George R, Ault JR, El Oualid F, Pawlowski K, Salvino JM, Eyers PA, Ranson NA, Del Galdo F, Greenberg RA, Zeqiraj E, Nature. 2019 May 29. pii: 10.1038/s41586-019-1232-1. doi:, 10.1038/s41586-019-1232-1. PMID:31142841
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (6r8f.pdb1.gz) 286 Kb
  • LPC: Ligand-Protein Contacts for 6R8F
  • CSU: Contacts of Structural Units for 6R8F
  • Retrieve 6R8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6R8F from S2C, [Save to disk]
    • View 6R8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6R8F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6r8f_K] [6r8f_C] [6r8f_D] [6r8f_A] [6r8f_G] [6r8f_L] [6r8f_B] [6r8f_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6R8F
  • Community annotation for 6R8F at PDBWiki (http://pdbwiki.org)

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