6S9J Viral Protein date Jul 15, 2019
title Crystal Structure Of Tfr1 Mimicry In Complex With Gp1 From M
authors R.Diskin, H.Cohen-Dvashi
compound source
Molecule: Pre-Glycoprotein Polyprotein Gp Complex
Chain: B, D, F, H
Fragment: Unp Residues 85-244
Synonym: Pre-Gp-C
Engineered: Yes
Other_details: Gshhhhhh Is An Expression Tag
 Organism_scientific: Machupo Virus
Organism_common: Macv
Organism_taxid: 11628
Gene: Gpc
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Transferrin Receptor 1,Transferrin Receptor 1
Chain: A, C, E, G
Engineered: Yes
Other_details: Sghhhhhh Is An Expression Tag,Sghhhhhh Is An Expression Tag
Organism_scientific: Neotoma Albigula
Organism_common: White-Throated Woodrat
Organism_taxid: 42408
Gene: Tfr1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 43 2 2
R_factor 0.241 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.626 104.626 281.363 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (422 Kb) [Save to disk]
  • Biological Unit Coordinates (6s9j.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (6s9j.pdb2.gz) 104 Kb
  • Biological Unit Coordinates (6s9j.pdb3.gz) 104 Kb
  • Biological Unit Coordinates (6s9j.pdb4.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 6S9J
  • CSU: Contacts of Structural Units for 6S9J
  • Structure Factors (1072 Kb)
  • Retrieve 6S9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S9J from S2C, [Save to disk]
    • View 6S9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6S9J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s9j_G] [6s9j_F] [6s9j_A] [6s9j_E] [6s9j_H] [6s9j_C] [6s9j_B] [6s9j_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6S9J
  • Community annotation for 6S9J at PDBWiki (http://pdbwiki.org)

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