6SUB	Hydrolase	date	Sep 13, 2019
title	Human Ptpru D1 Domain, Reduced Form
authors	I.M.Hay, G.W.Fearnley, H.J.Sharpe, J.E.Deane
compound		source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase U Chain: A Synonym: R-Ptp-U,Pancreatic Carcinoma Phosphatase 2,Pcp-2,P Tyrosine Phosphatase J,Hptp-J,Protein-Tyrosine Phosphatase Protein-Tyrosine Phosphatase Receptor Omicron,Ptp-Ro,Recept Protein-Tyrosine Phosphatase Psi,R-Ptp-Psi; Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptpru, Fmi, Pcp2, Ptpro Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: C 2 2 21	R_factor 0.182 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.821 107.887 88.328 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	CL	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Primary reference	The receptor PTPRU is a redox sensitive pseudophosphatase., Hay IM, Fearnley GW, Rios P, Kohn M, Sharpe HJ, Deane JE, Nat Commun. 2020 Jun 26;11(1):3219. doi: 10.1038/s41467-020-17076-w. PMID:32591542

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (6sub.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 6SUB CSU: Contacts of Structural Units for 6SUB Structure Factors (1163 Kb) Retrieve 6SUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6SUB from S2C, [Save to disk]

View 6SUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6SUB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6sub_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6SUB

Community annotation for 6SUB at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---