OCA Atlas for 6UPL

6UPL

Transcription Dna

date

Oct 17, 2019

title

Structure Of Fact_subnucleosome Complex 2

authors

K.Zhou, Y.Z.Tan, H.Wei, Y.Liu, B.Carragher, C.Potter, K.Luger

compound

source

Molecule: Histone H3.1
Chain: A, E
Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H3c1, H3fa, Hist1h3a, H3c2, H3fl, Hist1h3b, H3c3, H3f Hist1h3c, H3c4, H3fb, Hist1h3d, H3c6, H3fd, Hist1h3e, H3c7, Hist1h3f, H3c8, H3fh, Hist1h3g, H3c10, H3fk, Hist1h3h, H3c1 Hist1h3i, H3c12, H3fj, Hist1h3j;
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4;
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Histone H2a
Chain: C, K
Synonym: Histone H2al
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2ac, H2afl
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Histone H2b
Chain: D, L
Synonym: Histone H2b.1 A, Histone H2b.A, H2ba, Histone H2b Histone H2b.H, H2bh, Histone H2b.K, H2bk, Histone H2b.L,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2bc, H2bfl, Hist1h2be, H2bfh, Hist1h2bf, H2bfg, Hist1h2bg, H2bfa, Hist1h2bi, H2bfk;
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Fact Complex Subunit Spt16
Chain: G
Engineered: Yes
Other_details: Amino Acids 640-651 Cannot Be Identified Due Resolution Limitations. To Show The Connectivity Of The Ele Density, Poly-(Unk) Was Placed. This Was Also Done For The This Chain (926-967). The Full Sequence For The Experiment Mhhhhhhavtldkdayyrrvkrlysnwrkgedeyanvdaivvsvgvdeeivyakstalq Timvfcddkii Fmaskkkveflkqiantkgnenangapaitllireknesnkssfdkm Kkigvfskdkfpgefmkswndcl Nkegfdkidisavvaytiavkedgelnlmkkaasitsevfnkffkervmeivdadekvr Aieekkylaga Dpstvemcyppiiqsggnynlkfsvvsdknhmhfgaitcamgirfks Vdpsqevqenynfllqlqeellk Elrhgvkicdvynavmdvvkkqkpellnkitknlgfgmgiefregslvinsknqyklkk Sdltnkegkkp Eektyalfigdtvlvdedgpatvltsvkkkvknvgiflknedeeeee Grgsraalltertrnemtaeekr Rahqkelaaqlneeakrrlteqkgeqqiqkarksnvsyknpslmpkephiremkiyidk Giatpfhiati Knismsvegdytylrinfycpgsalgrnegnifpnpeatfvkeityr Tvpalnlqnafriikevqkrykt Reaeekekegivkqdslvinlnrsnpklkdlyirpniaqkrmqgsleahvngfrftsvr Ikhalfqpcdg Emiivlhfhlknaimfgkkrhtdvqfytevgeittdlgkhqhmhdrd Mrhklktafknfiekvealtkee Lefevpfrdlgfngapyrstcllqptssalvnatewppfvvtldevelihfervqfhlk Yskkvtminai Pvasldpikewlnscdlkytegvqslnwtkimktivddpegffeqgg Sdaeegdseseiedetfnpsedd Yeeeeedsdedysseaeesdyskeslgseeesgkdwdeleeearkadresryeeeeeqs Vhssgrgsnrg Srhssappkkkrk;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Fact Complex Subunit Ssrp1
Chain: H
Engineered: Yes
Other_details: The Poly-(Unk) Was Placed To Show The Electr
Between 171-198. The Full Sequence For The Experiment Is: Maetlefndvyqevkgsmndgrlrlsrqgiifknsktgkvdniqageltegiwrrvalg Hvykydgfres Efeklsdffkthyrlelmekdlcvkgwnwgtvkfggqllsfdigdqp Qcttgknevtlefhqnddaevsl Mevrfyvpptqedgvdpveafaqnvlskadviqatgdaicifrelqcltprgrydiriy Fdykipyttvl Rlfllphkdqrqmffvisldppikqgqtryhflillfskdedisltl Fegrltknmsgslyemvsrvmka Lvnrkitvpgnfqghsgaqcitcsykassgllyplergfiyvhkppvhirfdeisfvnf Dfeietkqgtq Ytfssiereeygklfdfvnakklniknrglkegmnpsydeyadsded Eegkireenandssddsgeetde Sfnpgeeeedvaeefdsnasassssnegdsdrdekkrkqlkkakmakdrksrkkpvevk Pmsaymlwlna Srekiksdhpgisitdlskkageiwkgmskekkeewdrkaedarrdy Rgesskrdkskkkkkvkvkmekk Stpsrgsssksssrqlsesfkskefvssdesssgenkskkkrrrsedseeeelastpps ;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Dna (79-Mer)
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (79-Mer)
Chain: J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

7.40 Å

Gene
Ontology

Chain	Function	Process	Component
A, E
D, L
F, B
G
H
K, C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (294 Kb) [Save to disk]

Biological Unit Coordinates (6upl.pdb1.gz) 283 Kb

CSU: Contacts of Structural Units for 6UPL

Retrieve 6UPL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6UPL from S2C, [Save to disk]

View 6UPL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6UPL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6upl_K] [6upl_G] [6upl_I] [6upl_B] [6upl_A] [6upl_L] [6upl_H] [6upl_E] [6upl_C] [6upl_F] [6upl_J] [6upl_D]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6UPL

Community annotation for 6UPL at PDBWiki (http://pdbwiki.org)

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