6V6F Oncoprotein date Dec 05, 2019
title Crystal Structure Of Q61l Kras(Gmppnp)-Nf1(Grd)-Spred1(Evh1)
authors W.Yan, D.K.Simanshu
compound source
Molecule: Sprouty-Related, Evh1 Domain-Containing Protein 1
Chain: A
Synonym: Hspred1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spred1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Neurofibromin
Chain: B
Synonym: Neurofibromatosis-Related Protein Nf-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gtpase Kras
Chain: C
Synonym: K-Ras 2,Ki-Ras,C-K-Ras,C-Ki-Ras
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kras, Kras2, Rask2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.011 70.240 79.700 90.00 100.67 90.00
method X-Ray Diffractionresolution 2.54 Å
ligand FMT, GNP, MG, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (6v6f.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 6V6F
  • CSU: Contacts of Structural Units for 6V6F
  • Structure Factors (219 Kb)
  • Retrieve 6V6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V6F from S2C, [Save to disk]
    • View 6V6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6V6F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v6f_A] [6v6f_B] [6v6f_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6V6F
  • Community annotation for 6V6F at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science