6V9I Ligase date Dec 13, 2019
title Cryo-Em Structure Of Cullin5 Bound To Ring-Box Protein 2 (Cu
authors E.A.Komives, R.J.Lumpkin, R.W.Baker, A.E.Leschziner
compound source
Molecule: Immunoglobulin G-Binding Protein G,Cullin-5
Chain: C
Synonym: Igg-Binding Protein G,Cul-5,Vasopressin-Activated Mobilizing Receptor 1,Vacm-1;
Engineered: Yes
Organism_scientific: Streptococcus Sp. Group G, Homo Sapien
Organism_common: Human
Organism_taxid: 1320, 9606
Gene: Spg, Cul5, Vacm1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Ring-Box Protein 2
Chain: R
Synonym: Rbx2,Ring Finger Protein 7,Sensitive To Apoptosis Protein;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Rnf7, Rbx2, Sag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.20 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C
  • calcium channel activity


  • R


    Primary referenceStructure and dynamics of the ASB9 CUL-RING E3 Ligase., Lumpkin RJ, Baker RW, Leschziner AE, Komives EA, Nat Commun. 2020 Jun 8;11(1):2866. doi: 10.1038/s41467-020-16499-9. PMID:32513959
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (6v9i.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 6V9I
  • CSU: Contacts of Structural Units for 6V9I
  • Retrieve 6V9I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6V9I from S2C, [Save to disk]
  • View 6V9I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6V9I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6v9i_C] [6v9i_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6V9I
  • Community annotation for 6V9I at PDBWiki (http://pdbwiki.org)

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