6VLR		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, MAN, NAG	enzyme
Primary reference	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates., Cottrell CA, van Schooten J, Bowman CA, Yuan M, Oyen D, Shin M, Morpurgo R, van der Woude P, van Breemen M, Torres JL, Patel R, Gross J, Sewall LM, Copps J, Ozorowski G, Nogal B, Sok D, Rakasz EG, Labranche C, Vigdorovich V, Christley S, Carnathan DG, Sather DN, Montefiori D, Silvestri G, Burton DR, Moore JP, Wilson IA, Sanders RW, Ward AB, van Gils MJ, PLoS Pathog. 2020 Aug 31;16(8):e1008753. doi: 10.1371/journal.ppat.1008753., eCollection 2020 Aug. PMID:32866207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk] Biological Unit Coordinates (6vlr.pdb1.gz) 437 Kb LPC: Ligand-Protein Contacts for 6VLR CSU: Contacts of Structural Units for 6VLR Retrieve 6VLR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6VLR from S2C, [Save to disk]

View 6VLR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6vlr_A] [6vlr_B] [6vlr_C] [6vlr_D] [6vlr_E] [6vlr_F] [6vlr_G] [6vlr_H] [6vlr_I] [6vlr_J] [6vlr_K] [6vlr_L] [6vlr_M] [6vlr_N] SWISS-PROT database:

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