6WPF Transferase Dna date Apr 27, 2020
title Structure Of Hiv-1 Reverse Transcriptase (Rt) In Complex Wit And D4t
authors N.Bertoletti, K.S.Anderson
compound source
Molecule: Dna Primer 21-Mer
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna Template 27-Mer
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Reverse Transcriptaseribonuclease H
Chain: A
Synonym: Pr160gag-Pol
Ec: 2.7.7.49, 2.7.7.7, 3.1.26.13
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Hxb2);
Organism_common: Hiv-1
Organism_taxid: 11706
Strain: Isolate Hxb2
Gene: Gag-Pol
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: P51 Rt
Chain: B
Ec: 2.7.7.-,3.1.-.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Hxb2);
Organism_common: Hiv-1
Organism_taxid: 11706
Strain: Isolate Hxb2
Gene: Gag-Pol
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: C 2 2 21
R_factor 0.182 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.569 170.468 103.343 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
ligand D4M, D4T, G47, GOL, MG, SO4 enzyme Transferase E.C.2.7.7.49 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk]
  • Biological Unit Coordinates (6wpf.pdb1.gz) 350 Kb
  • LPC: Ligand-Protein Contacts for 6WPF
  • CSU: Contacts of Structural Units for 6WPF
  • Structure Factors (316 Kb)
  • Retrieve 6WPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WPF from S2C, [Save to disk]
  • View 6WPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WPF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wpf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wpf_P] [6wpf_B] [6wpf_T] [6wpf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WPF
  • Community annotation for 6WPF at PDBWiki (http://pdbwiki.org)

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