6X5U Transferase date May 26, 2020
title Human Alpha-1,6-Fucosyltransferase (Fut8) Bound To Gdp And N
authors R.Kadirvelraj, Z.A.Wood
compound source
Molecule: Alpha-(1,6)-Fucosyltransferase
Chain: A, B, C, D, E, F, G, H
Synonym: Alpha1-6fuct,Fucosyltransferase 8,Gdp-L-Fuc:N-Acet Glucosaminide Alpha1,6-Fucosyltransferase,Gdp-Fucose--Glyco Fucosyltransferase,Glycoprotein 6-Alpha-L-Fucosyltransferas
Ec: 2.4.1.68
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fut8
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell: Hek293
symmetry Space Group: P 65
R_factor 0.190 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.020 154.020 466.920 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand ASN, BMA, GDP, MAN, NAG enzyme Transferase E.C.2.4.1.68 BRENDA
Primary referenceCharacterizing human alpha-1,6-fucosyltransferase (FUT8) substrate specificity and structural similarities with related fucosyltransferases., Boruah BM, Kadirvelraj R, Liu L, Ramiah A, Li C, Zong G, Bosman GP, Yang JY, Wang LX, Boons GJ, Wood ZA, Moremen KW, J Biol Chem. 2020 Oct 1. pii: RA120.014625. doi: 10.1074/jbc.RA120.014625. PMID:33004438
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1282 Kb) [Save to disk]
  • Biological Unit Coordinates (6x5u.pdb1.gz) 321 Kb
  • Biological Unit Coordinates (6x5u.pdb2.gz) 321 Kb
  • Biological Unit Coordinates (6x5u.pdb3.gz) 320 Kb
  • Biological Unit Coordinates (6x5u.pdb4.gz) 323 Kb
  • LPC: Ligand-Protein Contacts for 6X5U
  • CSU: Contacts of Structural Units for 6X5U
  • Structure Factors (1088 Kb)
  • Retrieve 6X5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6X5U from S2C, [Save to disk]
  • View 6X5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6X5U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6x5u_A] [6x5u_C] [6x5u_D] [6x5u_H] [6x5u_F] [6x5u_G] [6x5u_B] [6x5u_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6X5U
  • Community annotation for 6X5U at PDBWiki (http://pdbwiki.org)

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