6Y73 Hydrolase date Feb 28, 2020
title The Crystal Structure Of Human Macrod2 In Space Group P43
authors S.Wazir, M.M.Maksimainen, L.Lehtio
compound source
Molecule: Adp-Ribose Glycohydrolase Macrod2
Chain: A, B, C, D, E, F, G, H
Synonym: Macro Domain-Containing Protein 2,O-Acetyl-Adp-Rib Deacetylase Macrod2,[Protein Adp-Ribosylaspartate] Hydrolas [Protein Adp-Ribosylglutamate] Hydrolase Macrod2;
Ec: 3.5.1.-,3.2.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Macrod2, C20orf133
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.182 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.780 96.780 261.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand DMS, GOL, TLA enzyme Hydrolase E.C.3.5.1 BRENDA
Primary referenceMultiple crystal forms of human MacroD2., Wazir S, Maksimainen MM, Lehtio L, Acta Crystallogr F Struct Biol Commun. 2020 Oct 1;76(Pt 10):477-482. doi:, 10.1107/S2053230X20011309. Epub 2020 Sep 15. PMID:33006575
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • Biological Unit Coordinates (6y73.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (6y73.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (6y73.pdb3.gz) 42 Kb
  • Biological Unit Coordinates (6y73.pdb4.gz) 42 Kb
  • Biological Unit Coordinates (6y73.pdb5.gz) 42 Kb
  • Biological Unit Coordinates (6y73.pdb6.gz) 42 Kb
  • Biological Unit Coordinates (6y73.pdb7.gz) 43 Kb
  • Biological Unit Coordinates (6y73.pdb8.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 6Y73
  • CSU: Contacts of Structural Units for 6Y73
  • Structure Factors (2155 Kb)
  • Retrieve 6Y73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Y73 from S2C, [Save to disk]
  • View 6Y73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Y73
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6y73_C] [6y73_D] [6y73_E] [6y73_A] [6y73_G] [6y73_B] [6y73_H] [6y73_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Y73
  • Community annotation for 6Y73 at PDBWiki (http://pdbwiki.org)

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