6YFY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 28J, 2PO, DAL, DAR, DGL, DTH, MUB, NAG, P1W, ZAE enzyme
Primary referenceMode of action of teixobactins in cellular membranes., Shukla R, Medeiros-Silva J, Parmar A, Vermeulen BJA, Das S, Paioni AL, Jekhmane S, Lorent J, Bonvin AMJJ, Baldus M, Lelli M, Veldhuizen EJA, Breukink E, Singh I, Weingarth M, Nat Commun. 2020 Jun 5;11(1):2848. doi: 10.1038/s41467-020-16600-2. PMID:32503964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (661 Kb) [Save to disk]
  • Biological Unit Coordinates (6yfy.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 6YFY
  • CSU: Contacts of Structural Units for 6YFY
  • Original NMR restraints for 6YFY from PDB
  • Retrieve 6YFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YFY from S2C, [Save to disk]
  • View 6YFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6yfy_A] [6yfy_B] [6yfy_C] [6yfy_D] [6yfy_E] [6yfy_F] [6yfy_G] [6yfy_H]
  • SWISS-PROT database:

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