7AQF Hydrolase date Oct 21, 2020
title Crystal Structure Of Small Molecule Inhibitor Tm5484 Bound T Stabilized Active Plasminogen Activator Inhibitor-1 (Pai-1-
authors M.Sillen, S.V.Strelkov, P.J.Declerck
compound source
Molecule: Plasminogen Activator Inhibitor 1
Chain: A, B
Synonym: Pai-1,Endothelial Plasminogen Activator Inhibitor,
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Serpine1, Pai1, Planh1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Rosetta 2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pethsuk
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.296 64.322 106.644 90.00 116.96 90.00
method X-Ray Diffractionresolution 1.77 Å
ligand RV2 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (7aqf.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (7aqf.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 7AQF
  • CSU: Contacts of Structural Units for 7AQF
  • Structure Factors (1773 Kb)
  • Retrieve 7AQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7AQF from S2C, [Save to disk]
    • View 7AQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7AQF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7aqf_B] [7aqf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7AQF
  • Community annotation for 7AQF at PDBWiki (http://pdbwiki.org)

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