7C9W Virus date Jun 07, 2020
title E30 F-Particle In Complex With Cd55
authors K.Wang, L.Zhu, Y.Sun, M.Li, X.Zhao, L.Cui, L.Zhang, G.Gao, W.Zhai, F. Z.Rao, X.Wang
compound source
Molecule: Vp1
Chain: A
 Organism_scientific: Echovirus E30
Organism_taxid: 41846

Molecule: Vp2
Chain: B
Organism_scientific: Echovirus E30
Organism_taxid: 41846

Molecule: Vp3
Chain: C
Organism_scientific: Echovirus E30
Organism_taxid: 41846

Molecule: Vp4
Chain: D
Organism_scientific: Echovirus E30
Organism_taxid: 41846

Molecule: Complement Decay-Accelerating Factor
Chain: E
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd55, Cr, Daf
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand MYR, SPH enzyme
Primary referenceStructures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage., Wang K, Zhu L, Sun Y, Li M, Zhao X, Cui L, Zhang L, Gao GF, Zhai W, Zhu F, Rao Z, Wang X, Nat Commun. 2020 Sep 4;11(1):4421. doi: 10.1038/s41467-020-18251-9. PMID:32887891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (7c9w.pdb1.gz) 8410 Kb
  • LPC: Ligand-Protein Contacts for 7C9W
  • CSU: Contacts of Structural Units for 7C9W
  • Retrieve 7C9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7C9W from S2C, [Save to disk]
    • View 7C9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7C9W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7c9w_A] [7c9w_E] [7c9w_B] [7c9w_D] [7c9w_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7C9W
  • Community annotation for 7C9W at PDBWiki (http://pdbwiki.org)

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