7ICS	Transferase Dna	date	Apr 19, 1996
title	Dna Polymerase Beta (E.C.2.7.7.7)Dna Complex, Soaked In The Of Zncl2
authors	H.Pelletier, M.R.Sawaya
compound		source
Molecule: Dna (5'-D(Cpaptpcptpgpt)-3') Chain: T Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Cpapgpaptpg)-3') Chain: P Engineered: Yes		Synthetic: Yes
Molecule: Protein (Dna Polymerase Beta (E.C.2.7.7.7)) Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 178.512 57.726 48.522 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 1MQ3, 2BPC
Gene Ontology	Chain Function Process Component A
Primary reference	A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta., Pelletier H, Sawaya MR, Wolfle W, Wilson SH, Kraut J, Biochemistry 1996 Oct 1;35(39):12762-77. PMID:8841119

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (7ics.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 7ICS CSU: Contacts of Structural Units for 7ICS Likely Quarternary Molecular Structure file(s) for 7ICS Structure Factors (79 Kb) Retrieve 7ICS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 7ICS from S2C, [Save to disk] Re-refined 7ics structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 7ICS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 7ICS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 7ICS, from MSDmotif at EBI Genome occurence of 7ICS's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d7icsa4, region A:149-335 [Jmol] [rasmolscript] [script source]     - Domain d7icsa1, region A:9-91 [Jmol] [rasmolscript] [script source]     - Domain d7icsa3, region A:92-148 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [7ics_A] [7ics] [7ics_P] [7ics_T] SWISS-PROT database: [P06746] Domain organization of [DPOLB_HUMAN] by SWISSPFAM Domains found in 7ICS: [HhH1] [POLXc ] by SMART

Other resources with information on 7ICS

Community annotation for 7ICS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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