2BPC Nucleotidyltransferase date Jul 08, 1994
title Crystal Structure Of Rat Dna Polymerase Beta: Evidence For A Common Polymerase Mechanism
authors M.R.Sawaya, H.Pelletier, A.Kumar, S.H.Wilson, J.Kraut
compound source
Molecule: Dna Polymerase Beta
Chain: A
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Bacterial
symmetry Space Group: P 21 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.807 62.633 37.085 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MN enzyme Transferase E.C.2.7.7.7 BRENDA
related structures by homologous chain: 7ICS, 8ICN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism., Sawaya MR, Pelletier H, Kumar A, Wilson SH, Kraut J, Science 1994 Jun 24;264(5167):1930-5. PMID:7516581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2bpc.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2BPC
  • CSU: Contacts of Structural Units for 2BPC
  • Likely Quarternary Molecular Structure file(s) for 2BPC
  • Retrieve 2BPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BPC from S2C, [Save to disk]
  • View 2BPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BPC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BPC, from MSDmotif at EBI
  • Genome occurence of 2BPC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bpc_2, region 149-335 [Jmol] [rasmolscript] [script source]
        - Domain d2bpc_1, region 91-148 [Jmol] [rasmolscript] [script source]
  • Fold representative 2bpc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bpc_A] [2bpc]
  • SWISS-PROT database: [P06766]
  • Domain organization of [DPOLB_RAT] by SWISSPFAM
  • Domains found in 2BPC: [HhH1] [POLXc ] by SMART
  • Other resources with information on 2BPC
  • Community annotation for 2BPC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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