7JZI Immune System date Sep 02, 2020
title Crystal Structure Of Lair1 Ectodomain (From Mgd21) In Comple Plasmodium Rifin (Pf3d7_1040300) V2 Domain
authors K.Xu, P.D.Kwong
compound source
Molecule: Lair1 Ectodomain From Antibody Mgd21
Chain: A, C
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Rifin
Chain: B, D
Engineered: Yes
Organism_scientific: Plasmodium Falciparum (Isolate Nf54)
Organism_taxid: 5843
Strain: Isolate Nf54
Gene: Ck202_4895
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.240 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.409 72.178 57.917 90.00 91.08 90.00
method X-Ray Diffractionresolution 2.71 Å
ligand PT enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (7jzi.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (7jzi.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 7JZI
  • CSU: Contacts of Structural Units for 7JZI
  • Structure Factors (545 Kb)
  • Retrieve 7JZI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JZI from S2C, [Save to disk]
    • View 7JZI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JZI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jzi_A] [7jzi_D] [7jzi_B] [7jzi_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JZI
  • Community annotation for 7JZI at PDBWiki (http://pdbwiki.org)

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