7V6D Hydrolase date Aug 20, 2021
title Structure Of Lipase B From Lasiodiplodia Theobromae
authors B.Xue, H.F.Zhang, G.K.T.Nguyen, W.S.Yew
compound source
Molecule: Lipase B
Chain: A, B
Engineered: Yes
Organism_scientific: Lasiodiplodia Theobromae
Organism_taxid: 45133
Gene: Lipb, Dbv05_g2145
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Gs115
Expression_system_vector_type: Genome Integrated Linearized
Expression_system_plasmid: Ppic9k
symmetry Space Group: I 2 2 2
R_factor 0.192 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.428 162.639 166.674 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (7v6d.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (7v6d.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 7V6D
  • CSU: Contacts of Structural Units for 7V6D
  • Structure Factors (1260 Kb)
  • Retrieve 7V6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7V6D from S2C, [Save to disk]
  • View 7V6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7V6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7v6d_A] [7v6d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7V6D
  • Community annotation for 7V6D at PDBWiki (http://pdbwiki.org)

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