8H3A Ligase date Oct 08, 2022
title Cryo-Em Structure Of The Kbtbd2-Crl3~N8(Removed)-Csn Complex
authors Y.Hu, Q.Mao, Z.Chen, L.Sun
compound source
Molecule: Cop9 Signalosome Complex Subunit 5
Chain: E
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops5, Csn5, Jab
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Cop9 Signalosome Complex Subunit 1
Chain: A
Synonym: Sgn1,Signalosome Subunit 1,G Protein Pathway Suppr Gps-1,Jab1-Containing Signalosome Subunit 1,Protein Mfh;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gps1, Cops1, Csn1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Cop9 Signalosome Complex Subunit 2
Chain: B
Synonym: Sgn2,Signalosome Subunit 2,Alien Homolog,Jab1-Cont Signalosome Subunit 2,Thyroid Receptor-Interacting Protein Interacting Protein 15,Trip-15;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops2, Csn2, Trip15
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Cop9 Signalosome Complex Subunit 3
Chain: C
Synonym: Sgn3,Signalosome Subunit 3,Jab1-Containing Signalo Subunit 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops3, Csn3
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Cop9 Signalosome Complex Subunit 4
Chain: D
Synonym: Sgn4,Signalosome Subunit 4,Jab1-Containing Signalo Subunit 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops4, Csn4
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Cop9 Signalosome Complex Subunit 6
Chain: F
Synonym: Sgn6,Signalosome Subunit 6,Jab1-Containing Signalo Subunit 6,Mov34 Homolog,Vpr-Interacting Protein,Hvip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops6, Csn6, Hvip
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Cop9 Signalosome Complex Subunit 7b
Chain: G
Synonym: Sgn7b,Signalosome Subunit 7b,Jab1-Containing Signa Subunit 7b;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops7b, Csn7b
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Cop9 Signalosome Complex Subunit 8
Chain: H
Synonym: Sgn8,Signalosome Subunit 8,Cop9 Homolog,Hcop9,Jab1 Containing Signalosome Subunit 8;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cops8, Csn8
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Kelch Repeat And Btb Domain-Containing Protein 2
Chain: I, M
Synonym: Btb And Kelch Domain-Containing Protein 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kbtbd2, Bklhd1, Kiaa1489, Cgi-73
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Cullin-3
Chain: L
Synonym: Cul-3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cul3, Kiaa0617
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: E3 Ubiquitin-Protein Ligase Rbx1
Chain: R
Synonym: E3 Ubiquitin-Protein Transferase Rbx1,Protein Zyp, Finger Protein 75,Ring-Box Protein 1,Rbx1,Regulator Of Cull Roc1;
Ec: 2.3.2.27,2.3.2.32
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbx1, Rnf75, Roc1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.51 Å
ligand ZN enzyme Transferase E.C.2.3.2.27 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (669 Kb) [Save to disk]
  • Biological Unit Coordinates (8h3a.pdb1.gz) 662 Kb
  • LPC: Ligand-Protein Contacts for 8H3A
  • CSU: Contacts of Structural Units for 8H3A
  • Retrieve 8H3A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8H3A from S2C, [Save to disk]
    • View 8H3A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 8H3A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8h3a_B] [8h3a_I] [8h3a_F] [8h3a_M] [8h3a_H] [8h3a_R] [8h3a_A] [8h3a_G] [8h3a_L] [8h3a_D] [8h3a_C] [8h3a_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 8H3A
  • Community annotation for 8H3A at PDBWiki (http://pdbwiki.org)

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