1A21 Glycoprotein date Jan 14, 1998
title Tissue Factor (Tf) From Rabbit
authors Y.A.Muller, A.M.De Vos
compound source
Molecule: Tissue Factor
Chain: A, B
Fragment: Extracellular Domain, Residues 1 - 219
Engineered: Yes
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Organ: Blood
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.191 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.540 49.010 65.010 96.06 99.11 91.14
method X-Ray Diffractionresolution 2.35 Å
related structures by homologous chain: 1BOY, 1TFH
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHinge bending within the cytokine receptor superfamily revealed by the 2.4 A crystal structure of the extracellular domain of rabbit tissue factor., Muller YA, Kelley RF, de Vos AM, Protein Sci 1998 May;7(5):1106-15. PMID:9605315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1a21.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (1a21.pdb2.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1A21
  • Likely Quarternary Molecular Structure file(s) for 1A21
  • Structure Factors (178 Kb)
  • Retrieve 1A21 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A21 from S2C, [Save to disk]
  • Re-refined 1a21 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1A21 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1A21
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A21, from MSDmotif at EBI
  • Genome occurence of 1A21's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a21a2, region A:107-208 [Jmol] [rasmolscript] [script source]
        - Domain d1a21a1, region A:4-106 [Jmol] [rasmolscript] [script source]
        - Domain d1a21b2, region B:107-208 [Jmol] [rasmolscript] [script source]
        - Domain d1a21b1, region B:4-106 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a21_A] [1a21_B] [1a21]
  • SWISS-PROT database: [P24055]
  • Domain organization of [TF_RABIT] by SWISSPFAM
    • Other resources with information on 1A21
  • Community annotation for 1A21 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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