1BOY Class 2 Cytokine Receptor date Jan 11, 1996
title Extracellular Region Of Human Tissue Factor
authors C.W.G.Boys, E.G.D.Tuddenham, K.Harlos
compound source
Molecule: Human Tissue Factor
Chain: A
Fragment: Extracellular Domain, Residues 1 - 219
Synonym: Tf
Engineered: Yes
Other_details: Type B Crystals
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: W3110
Variant: Tona
Atcc: 27325
Organ: Blood
Gene: Human Tissue Factor Cdna Codon
Expression_system: Periplasmic Secretion (U.S Pat 4963, 495);
Expression_system_plasmid: Phgh4l (Gene 55:189-196, 1987)
Expression_system_gene: Human Tissue Factor Cdna Codons 1- 119;
Other_details: Purified By Monoclonal Antibody Affinity, Reversed Phase Hplc And Iso-Electric Focussing
symmetry Space Group: P 41 21 2
R_factor 0.203 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.400 45.400 230.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1A21, 1FAK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the extracellular region of human tissue factor., Harlos K, Martin DM, O'Brien DP, Jones EY, Stuart DI, Polikarpov I, Miller A, Tuddenham EG, Boys CW, Nature 1994 Aug 25;370(6491):662-6. PMID:8065454
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1boy.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 1BOY
  • Likely Quarternary Molecular Structure file(s) for 1BOY
  • Retrieve 1BOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BOY from S2C, [Save to disk]
  • View 1BOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BOY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BOY, from MSDmotif at EBI
  • Genome occurence of 1BOY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1boy_2, region 107-213 [Jmol] [rasmolscript] [script source]
        - Domain d1boy_1, region 3-106 [Jmol] [rasmolscript] [script source]
  • Fold representative 1boy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1boy_A] [1boy]
  • SWISS-PROT database: [P13726]
  • Domain organization of [TF_HUMAN] by SWISSPFAM
  • Other resources with information on 1BOY
  • Community annotation for 1BOY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science