1FAK Blood Clotting date Dec 28, 1998
title Human Tissue Factor Complexed With Coagulation Factor Viia Inhibited With A Bpti-Mutant
authors E.Zhang, R.St Charles, A.Tulinsky
compound source
Molecule: Protein (Blood Coagulation Factor Viia)
Chain: L
Fragment: Light Chain
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Kidney Cells (Bhk)

Molecule: Protein (Blood Coagulation Factor Viia)
Chain: H
Fragment: Heavy Chain
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Kidney Cells (Bhk)

Molecule: Protein (Soluble Tissue Factor)
Chain: T
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (5l15)
Chain: I
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized
symmetry Space Group: C 2 2 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.490 190.000 175.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, FUC, GLC enzyme Hydrolase E.C.3.4.21.21 BRENDA
related structures by homologous chain: 1BOY, 1BZX, 1CVW, 1O5D, 1UJ3, 4TPI
Primary referenceStructure of extracellular tissue factor complexed with factor VIIa inhibited with a BPTI mutant., Zhang E, St Charles R, Tulinsky A, J Mol Biol 1999 Feb 5;285(5):2089-104. PMID:9925787
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (1fak.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 1FAK
  • CSU: Contacts of Structural Units for 1FAK
  • Likely Quarternary Molecular Structure file(s) for 1FAK
  • Retrieve 1FAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FAK from S2C, [Save to disk]
  • View 1FAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FAK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FAK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fakh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1faki_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1fakl3, region L:36-48 [Jmol] [rasmolscript] [script source]
        - Domain d1fakl1, region L:49-86 [Jmol] [rasmolscript] [script source]
        - Domain d1fakl2, region L:87-143 [Jmol] [rasmolscript] [script source]
        - Domain d1fakt2, region T:107-210 [Jmol] [rasmolscript] [script source]
        - Domain d1fakt1, region T:6-106 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fak from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fak_H] [1fak_I] [1fak] [1fak_T] [1fak_L]
  • SWISS-PROT database: [P00974] [P08709] [P13726]
  • Domain organization of [BPT1_BOVIN] [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 1FAK: [EGF] [EGF_CA] [GLA] [KU] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1FAK with the sequences similar proteins can be viewed for 1FAK's classification [BPT1_BOVIN] [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BPT1_BOVIN] [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1FAK
  • Community annotation for 1FAK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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