OCA Atlas for 1FAK

1FAK

Blood Clotting

date

Dec 28, 1998

title

Human Tissue Factor Complexed With Coagulation Factor Viia I With A Bpti-Mutant

authors

E.Zhang, R.St Charles, A.Tulinsky

compound

source

Molecule: Protein (Blood Coagulation Factor Viia)
Chain: L
Fragment: Light Chain
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Kidney Cells (Bhk)

Molecule: Protein (Blood Coagulation Factor Viia)
Chain: H
Fragment: Heavy Chain
Ec: 3.4.21.21
Engineered: Yes

Molecule: Protein (Soluble Tissue Factor)
Chain: T
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (5l15)
Chain: I
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized

symmetry

Space Group: C 2 2 21

R_factor

R_Free

NULL

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
63.490	190.000	175.300	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.10 Å

ligand

CA, FUC, GLC

enzyme

Hydrolase E.C.3.4.21.21 BRENDA

related structures

by homologous chain: 1BOY, 1BZX, 1CVW, 1O5D, 1UJ3, 4TPI

Gene
Ontology

Chain	Function	Process	Component
H
I
L
T

Primary reference

Structure of extracellular tissue factor complexed with factor VIIa inhibited with a BPTI mutant., Zhang E, St Charles R, Tulinsky A, J Mol Biol 1999 Feb 5;285(5):2089-104. PMID:9925787

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]

Biological Unit Coordinates (1fak.pdb1.gz) 101 Kb

LPC: Ligand-Protein Contacts for 1FAK

CSU: Contacts of Structural Units for 1FAK

Likely Quarternary Molecular Structure file(s) for 1FAK

Retrieve 1FAK in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1FAK from S2C, [Save to disk]

View 1FAK in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FAK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1FAK, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1fakh_, region H [Jmol] [rasmolscript] [script source]
- Domain d1faki_, region I [Jmol] [rasmolscript] [script source]
- Domain d1fakl3, region L:36-48 [Jmol] [rasmolscript] [script source]
- Domain d1fakl1, region L:49-86 [Jmol] [rasmolscript] [script source]
- Domain d1fakl2, region L:87-143 [Jmol] [rasmolscript] [script source]
- Domain d1fakt2, region T:107-210 [Jmol] [rasmolscript] [script source]
- Domain d1fakt1, region T:6-106 [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fak_H] [1fak_I] [1fak] [1fak_T] [1fak_L]

SWISS-PROT database: [P00974] [P08709] [P13726]

Domain organization of [BPT1_BOVIN] [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM

Domains found in 1FAK: [EGF_CA] [EGF_like] [GLA] [KU] [Tryp_SPc ] by SMART

Other resources with information on 1FAK

Community annotation for 1FAK at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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