1CVW Hydrolase Hydrolase Inhibitor date Aug 24, 1999
title Crystal Structure Of Active Site-Inhibited Human Coagulation Viia (Des-Gla)
authors G.Kemball-Cook, D.J.D.Johnson, E.G.D.Tuddenham, K.Harlos
compound source
Molecule: Coagulation Factor Viia (Light Chain) (Des-Gla)
Chain: L
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_organ: Ovary

Molecule: Coagulation Factor Viia (Heavy Chain) (Des-Gla)
Chain: H
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_organ: Ovary
symmetry Space Group: P 41 21 2
R_factor 0.205 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.850 94.850 114.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand 0GE, 0QE, ANS, AR7, ARM, CA enzyme Hydrolase E.C.3.4.21.21 BRENDA
related structures by homologous chain: 1FAK, 1KLJ
Gene
Ontology
ChainFunctionProcessComponent
H


Primary referenceCrystal structure of active site-inhibited human coagulation factor VIIa (des-Gla)., Kemball-Cook G, Johnson DJ, Tuddenham EG, Harlos K, J Struct Biol 1999 Oct;127(3):213-23. PMID:10544046
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1cvw.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1CVW
  • CSU: Contacts of Structural Units for 1CVW
  • Likely Quarternary Molecular Structure file(s) for 1CVW
  • Structure Factors (170 Kb)
  • Retrieve 1CVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CVW from S2C, [Save to disk]
  • Re-refined 1cvw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CVW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CVW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cvwh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1cvwl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1cvw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cvw] [1cvw_J] [1cvw_H] [1cvw_L]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domains found in 1CVW: [EGF] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1CVW with the sequences similar proteins can be viewed for 1CVW's classification [FA7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1CVW
  • Community annotation for 1CVW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CVW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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