1CVW	Hydrolase Hydrolase Inhibitor	date	Aug 24, 1999
title	Crystal Structure Of Active Site-Inhibited Human Coagulation Viia (Des-Gla)
authors	G.Kemball-Cook, D.J.D.Johnson, E.G.D.Tuddenham, K.Harlos
compound		source
Molecule: Coagulation Factor Viia (Light Chain) (Des-Gla) Chain: L Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_organ: Ovary
Molecule: Coagulation Factor Viia (Heavy Chain) (Des-Gla) Chain: H Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_organ: Ovary
symmetry	Space Group: P 41 21 2	R_factor 0.205 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.850 94.850 114.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.28 Å
ligand	0GE, 0QE, ANS, AR7, ARM, CA	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
related structures	by homologous chain: 1FAK, 1KLJ
Primary reference	Crystal structure of active site-inhibited human coagulation factor VIIa (des-Gla)., Kemball-Cook G, Johnson DJ, Tuddenham EG, Harlos K, J Struct Biol 1999 Oct;127(3):213-23. PMID:10544046

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (1cvw.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 1CVW CSU: Contacts of Structural Units for 1CVW Likely Quarternary Molecular Structure file(s) for 1CVW Structure Factors (170 Kb) Retrieve 1CVW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CVW from S2C, [Save to disk] Re-refined 1cvw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1CVW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1CVW

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1CVW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cvwh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1cvwl_, region L [Jmol] [rasmolscript] [script source] Fold representative 1cvw from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cvw_H] [1cvw_L] [1cvw_J] SWISS-PROT database: [P08709] Domain organization of [FA7_HUMAN] by SWISSPFAM Domains found in 1CVW: [EGF] [Tryp_SPc ] by SMART Alignments of the sequence of 1CVW with the sequences similar proteins can be viewed for 1CVW's classification [FA7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1CVW

Community annotation for 1CVW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1CVW from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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