1KLJ Hydrolase date Dec 12, 2001
title Crystal Structure Of Uninhibited Factor Viia
authors K.Sichler, D.Banner, A.D'Arcy, K.P.Hopfner, R.Huber, W.Bode, G.B.Kresse, E.Kopetzki, H.Brandstetter
compound source
Molecule: Factor Viia
Chain: L
Fragment: Light Chain
Ec: 3.4.21.21
Engineered: Yes
Other_details: N-Terminal Truncation
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pds

Molecule: Factor Viia
Chain: H
Fragment: Heavy Chain
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pds
symmetry Space Group: P 41 21 2
R_factor 0.231 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.443 94.443 114.315 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.44 Å
ligand CA, EDO enzyme Hydrolase E.C.3.4.21.21 BRENDA
related structures by homologous chain: 1CVW, 1QFK, 1W0Y
Primary referenceCrystal structures of uninhibited factor VIIa link its cofactor and substrate-assisted activation to specific interactions., Sichler K, Banner DW, D'Arcy A, Hopfner KP, Huber R, Bode W, Kresse GB, Kopetzki E, Brandstetter H, J Mol Biol 2002 Sep 20;322(3):591-603. PMID:12225752
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1klj.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1KLJ
  • CSU: Contacts of Structural Units for 1KLJ
  • Likely Quarternary Molecular Structure file(s) for 1KLJ
  • Structure Factors (157 Kb)
  • Retrieve 1KLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KLJ from S2C, [Save to disk]
  • Re-refined 1klj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KLJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KLJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kljh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1kljl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1klj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1klj] [1klj_L] [1klj_H]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domains found in 1KLJ: [EGF] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1KLJ with the sequences similar proteins can be viewed for 1KLJ's classification [FA7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1KLJ
  • Community annotation for 1KLJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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